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Open Access Original article

Survival of Clostridium perfringens During Simulated Transport and Stability of Some Plasmid-borne Toxin Genes under Aerobic Conditions

A Johansson1*, BE Engström1, J Frey2, K-E Johansson13 and V Båverud1

  • * Corresponding author: A Johansson

Author Affiliations

1 National Veterinary Institute, SE-751 89 Uppsala, Sweden

2 Institute of Veterinary Bacteriology, University of Bern, Laenggass-Str. 122, CH-3001 Bern, Switzerland

3 Division of Food Hygiene and Bacteriology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Uppsala, Sweden

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Acta Veterinaria Scandinavica 2005, 46:241-247  doi:10.1186/1751-0147-46-241

The electronic version of this article is the complete one and can be found online at:

Received:15 June 2005
Accepted:27 July 2005
Published:31 December 2005


Clostridium perfringens is a pathogen of great concern in veterinary medicine, because it causes enteric diseases and different types of toxaemias in domesticated animals. It is important that bacteria in tissue samples, which have been collected in the field, survive and for the classification of C. perfringens into the correct toxin group, it is crucial that plasmid-borne genes are not lost during transportation or in the diagnostic laboratory. The objectives of this study were to investigate the survival of C. perfringens in a simulated transport of field samples and to determine the stability of the plasmid-borne toxin genes cpb1 and etx after storage at room temperature and at 4°C. Stability of the plasmid-borne genes cpb1 and etx of C. perfringens CCUG 2035, and cpb2 from C. perfringens CIP 106526, JF 2255 and 6 field isolates in aerobic atmosphere was also studied. Survival of C. perfringens was similar in all experiments. The cpb1 and etx genes were detected in all isolates from samples stored either at room temperature or at 4°C for 24–44 h. Repeated aerobic treatment of C. perfringens CCUG 2035 and CIP 106526 did not result in the loss of the plasmid-borne genes cpb1, cpb2 or etx. Plasmid-borne genes in C. perfringens were found to be more stable than generally reported. Therefore, C. perfringens toxinotyping by PCR can be performed reliably, as the risk of plasmid loss seems to be a minor problem.

Clostridium perfringens; survival; plasmid-borne genes; stability


Clostridium perfringens is known to be a universal pathogen in humans, domestic animals and wildlife and is certainly the primary cause of clostridial enteric disease in domestic animals. C. perfringens also causes severe toxaemias in many domesticated animals [13]. Members of the species C. perfringens can be subtyped into five toxinotypes (A, B, C, D and E) according to the production of four major toxins: α, β, ε and ι. Previously, laboratory animal tests and serological methods were used for toxinotyping of C. perfringens [11], but nowadays a multiplex PCR is used by which all the major toxin genes, alpha toxin gene (plc), beta toxin gene (cpb1), epsilon toxin gene (etx) and iota toxin gene (iap) can be detected [3]. Of the four major toxin genes, only plc is located on the chromosome while the others are located on plasmids [11]. An additional toxin and virulence factor, designated β2-toxin, has recently been found and associated with enteric diseases in domestic animals, especially piglets [4,9,14] and horses [5]. The β2-toxin gene (cpb2) is also located on a plasmid.

The stability of the plasmid-borne genes in C. perfringens is crucial for the correct typing of a C. perfringens isolate. It has been discussed previously whether the plasmid-borne genes cpb1, etx and iap may be lost when strains are stored for extended periods [15]. It is assumed that C. perfringens plasmid-borne genes are unstable, a matter that has to be taken into consideration in microbiological laboratory diagnosis of clostridial infections [1]. For typing of C. perfringens isolates, it is therefore recommended to include 5–10 individual colonies in the determination of the toxin type [1]. Another reason for including several colonies is that more than one toxinotype of C. perfringens may be present in a clinical sample. For diagnosis of infection by anaerobic pathogenic bacteria such as C. perfringens, it is necessary to protect the clinical samples from oxygen [2,7,12]. A representative sampling in the field and safe transport to the laboratory is crucial for successful culturing and identification of the bacteria. For years, swabs have been used to sample and transport clinical material for bacteriological examination. Swab transport systems containing semisolid media have been developed for the transport of samples for subsequent anaerobic cultivation. These systems have been shown to protect both anaerobic and fastidious aerobic organisms [6]. Preferably the infected material should be cultured immediately after sampling, although delay is common.

The aims of the study were to investigate the survival of C. perfringens and the stability of the plasmid-borne genes cpb1 and etx in a simulated C. perfringens containing tissue sample at 20°C and at 4°C. Furthermore the stability of plasmid-borne genes (cpb1, cpb2 and etx) was assessed after exposure of C. perfringens strains to atmospheric oxygen.

Materials and methods

Bacterial strains and growth conditions

The type strain C. perfringens type B CCUG 2035 (cpb1, etx) was obtained from the Culture Collection University of Gothenburg, Sweden. This strain was chosen because it contains two plasmid-borne genes (cpb1 and etx). Strain C. perfringens type A CIP 106526 (cpb2) was obtained from the Culture Collection of Institute Pasteur, Paris, France. The type A strain JF 2255 (cpb2) was isolated from a horse with typhlocolitis. The strains were cultured on Fastidious Anaerobe Agar (FAA) (LabM, Bury, Lancashire, England) with 10% defibrinated horse blood and incubated anaerobically over night at 37°C.

Survival of C. perfringens and stability of the plasmid-borne genes cpb1 and etx after simulated transport

One colony of C. perfringens CCUG 2035 was inoculated into 10 ml of Fastidious Anaerobe Broth (FAB) (LabM, Bury, Lancashire, England), which was further incubated over night under anaerobic conditions at 37°C. Tenfold serial dilutions of C. perfringens in saline were prepared. The number of CFU/ml from the dilutions was determined by plating 100 μl from each dilution on two FAA plates. In order to simulate a sample of infected tissue, 2 g of chicken liver and 2 ml of a tenfold serial dilution of C. perfringens were added to a stomacher bag. The bacterial count in the prepared suspensions was 0.5 × 101 – 0.5 × 105 CFU/ml. The mixture in the bag was homogenized by vibration for 2 min. Two cotton-tipped swabs were dipped in each mixture for at least one minute. Each swab was then placed in a tube with Amies medium with charcoal (Copan International, Corona, Italy). Two experiments were performed to compare different transport conditions at different temperatures according to Table 1. After the simulated transport, each cotton-tipped swab was streaked onto two FAA plates, which were incubated under anaerobic conditions as described earlier. Growth of the bacteria was classified as shown in Table 1.

Table 1. Survival of Clostridium perfringens CCUG 2035 on swabs in Amies medium after simulated transport.

From experiment I, 20 colonies were collected from samples stored at 4°C for 24 h and 20 colonies from samples stored at room temperature (+20°C). DNA preparations were made according to the direct lysis method of [5]. The DNA preparations were stored at -20°C and were all retested for the presence of the major toxin genes one year later. The bacteria were mixed with liver tissue. Organ tissue, invariably present in a swab sample, can act as a substrate for the bacteria and thereby influence the survival of the bacteria. In experiment I, we also investigated if the C. perfringens count was higher after the transport than before (Table 2).

Table 2. Number of C. perfringens CCUG 2035 on Amies swab before and after storage.

Stability of the plasmid-borne genes cpb1, cpb2 and etx under aerobic conditions on agar plates

The strains, C. perfringens CCUG 2035 (cpb1, etx) and C. perfringens type A CIP 106526 (cpb2) were cultured on FAA plates and incubated in anaerobic atmosphere at 37°C. After overnight incubation, material (approximately half a colony) from three colonies was harvested for further PCR investigation. The remaining materials from the three colonies were left on the FAA plate under aerobic conditions at room temperature (20°C) for 8 h, and then plated out on three FAA plates. After over night incubation, material from a total of ten colonies from the three FAA plates was harvested and DNA preparations for further PCR investigation were made as described previously. The remaining material from the ten colonies was left on the FAA plates under aerobic conditions for 8 h, and then plated out on one FAA plate each. The same procedure as above, with one colony from ten plates, was repeated six times. Altogether 73 colonies were collected for each isolate. The last samples of bacteria had been exposed to aerobic atmosphere for 8 h, repeated seven times (56 h). As a control, isolates were grown and kept under constant anaerobic conditions and subcultured seven times. Three colonies per plate were harvested and DNA preparations for further PCR investigation were done as described above.

Stability of the plasmid-borne genes cpb1, cpb2 and etx under aerobic conditions in liquid medium

Strains CCUG 2035 (cpb1 and etx), CIP 106526 (cpb2), JF 2255 (cpb2) and 6 cpb2 positive C. perfringens type A Swedish field isolates (2 from chicken, 2 from pig and 2 from horse) were subcultured twice on FAA plates and incubated in anaerobic atmosphere at 37°C. The six field isolates were included in this experiment, as reference strains are adapted to laboratory growth conditions and hence are expected to be more stable with respect to plasmid-borne genes. One colony was inoculated in 10 ml of Brain Heart Infusion (BHI) (Difco, Detroit, MI, USA), which was incubated anaerobically over night at 37°C. After incubation, the suspension was diluted 1:10 in BHI, and approximately 5 ml was transferred to a petri dish. The petri dishes containing the suspensions were kept aerobically at room temperature. As a control, one sample was collected at the start of the experiment and it was plated on FAA agar plates. After 8 hours of aerobic exposure, material was collected, diluted and plated on FAA agar. These plates were incubated in anaerobic atmosphere at 37°C. Two DNA preparations were made from the control sample and 20 DNA preparations from the colonies originating from the 8 h aerobic exposure. Altogether, 198 DNA preparations were collected.

Multiplex and duplex PCR

The three toxin genes plc, cpb1 and etx of C. perfringens 2035 were detected by a modified version of a multiplex PCR assay by [3]. One μl of template DNA, prepared by a direct lysis method of [5], was added to a 50 μl reaction mixture, with the following reagents: 50 mM KCl, 10 mM Tris-HCl (pH 8.3), 2.5 mM MgCl2, 50 nM of each deoxynucleotide, 1 U of AmpliTaq Gold DNA polymerase (Applied Biosystems, Foster City, CA, USA), 50 nM of each CPA (α-toxin) primer, 25 nM of each CPB (β1-toxin) primer, 100 nM of each CPE (ε-toxin) primer and 25 nM of each CPI (ι-toxin) primer. In this study the CPI primers were included in order to get optimal concentrations in the PCR mastermix, although no iap gene was detected. The thermocycling (incubations for 1 min at 94°C, 55°C and 72°C, respectively, repeated 35 times) was preceded by incubation for 10 min at 94°C. The presence of the β2-toxin gene was also determined. β2 primers (250 nM) [5] and enterotoxin primers (50 nM) [8] were used in a duplex PCR. The conditions were as in the multiplex PCR, except for the annealing temperature, which was 59°C. The amplicons were analysed by electrophoresis on a 1.5% agarose gel according to standard procedures.


The survival of C. perfringens CCUG 2035 stored under different conditions is shown in Table 1. Survival was similar under all the different conditions applied during the simulated transports. Chilling of the sample did not increase the survival rate of the bacteria. It was found that at least 0.5 × 103 CFU/ml of C. perfringens must be present in the sample in order to detect the bacterium under the conditions applied in this study (Table 1). The results presented in Table 2 show clearly that C. perfringens did not multiply on swabs stored in Amies transport medium. All toxin genes (plc, cpb1 and etx) were detected in all the 40 DNA preparations from experiment I by PCR.

The plasmid-borne genes cpb1 and etx of C. perfringens CCUG 2035 and cpb2 from CIP 106526 were detected by PCR in all the DNA preparations originating from colonies exposed repeatedly to aerobic atmosphere on agar plates. The cpb2 gene of the isolates CIP 106526, JF 2255 and the six field isolates were also retained after 8 h of aerobic exposure in liquid medium, judging by PCR. As all the toxin genes were detected after exposure to oxygen, it was deemed unnecessary to examine the controls, which were not exposed to oxygen.


For accurate microbiological diagnostics it is important that bacteria in a tissue sample taken in the field should survive and that plasmid-borne genes if present are not lost during transport to the laboratory. In this study we examined the effect of chilling on the survival of C. perfringens in a tissue sample stored in a tube with Amies medium up to 44 h.

As shown in Table 1, no differences were detected in the survival of C. perfringens CCUG 2035 under the conditions applied in the two experiments, which indicates that temperature during transport is not a critical factor for the survival of C. perfringens in clinical samples. Prolonged storage for 44 h at 4°C did not affect the survival of the bacteria. These observations confirm results where it was found that there was no significant effect on the survival rate when comparing 24 and 48 h storage in Amies medium, at room temperature [10]. However, [16] demonstrated that temperature has an impact on the survival of C. perfringens when incubated for a long time. In that study, 10% of the initial amount of the bacteria could be detected after 1–4 days at 20°C while at 4°C C. perfringens survived up to two weeks. In our study short storage periods were used, which is in accordance with practice in most European countries. The detection level of C. perfringens in this experiment was 500 CFU/ml in the suspension, which can be considered adequate for detection of C. perfringens in diseased animals. The ability of C. perfringens to form spores that can survive for very long times must also been taken into consideration when survival of C. perfringens is discussed. The presence of spores in a clinical sample can significantly influence survival times.

A common opinion is that C. perfringens plasmid-borne genes are apparently unstable, although no data to prove this hypothesis are available. In this study all toxin genes, cpa, cpb1 and etx were detected in all the 40 DNA preparations originating from C. perfringens kept either at room temperature or at 4°C for 24 h and all were classified as C. perfringens type B. Furthermore all the C. perfringens plasmid-borne genes cpb1, cpb2 and etx were retained when isolates were repeatedly exposed to aerobic environment on agar plates and after 8 h oxygen exposure in BHI. The stability of C. perfringens plasmid-borne genes has been discussed previously [15]. In that study it was stated that the plasmid-borne genes cpb1, etx and iap might be lost during long-term storage of isolates. It was found that 14 of 23 original type B and C strains lost their plasmid genes after storage for several years at -70°C. Initial studies with the primary culture of strain JF 2255 showed an apparent loss of the cpb2 containing plasmid. However, in a cloned single colony of JF 2255 the cpb2 gene showed full stability after exposure for 8 h to ambient atmosphere. The apparent loss of cpb2 in the previous experiment can be explained under the assumption that the original isolate contained both cpb2 positive and cpb2 negative colonies that have different growth rates.

Our results indicate that the plasmid-borne genes cpb1, cpb2 and etx are stable under normal laboratory conditions and under conditions normally used during transportation. Therefore, C. perfringens toxinotyping by PCR can be performed reliably, as the risk of plasmid loss and problems with misleading results seem to be a minor problem.


In this study the different temperatures used for storage did not affect the survival of C. perfringens. The three plasmid-borne genes cpb1, cpb2 and etx were detected in all the DNA preparations that originated from colonies exposed to aerobic conditions. It is very important for classification of C. perfringens into the correct toxin group that the plasmid-borne genes are not lost during transport or lost in the clinical laboratory. Our results demonstrate that the plasmid encoded genes cpb1, cpb2 and etx are stable under normal laboratory conditions and under conditions normally used during transportation.


We thank Anders Gunnarsson at our Institute for fruitful discussions. The authors are grateful to Eva Saarinen for excellent technical assistance. This study was supported financially by grants from the Swedish Farmers' Foundation for Agricultural Research and the Swedish National Veterinary Institute. Finally we wish to acknowledge the support of the European Concerted Action QLK2-CT2001-01267 on genus Clostridium.


  1. Buogo C, Capaul S, Häni H, Frey J, Nicolet J: Diagnosis of Clostridium perfringens Type C enteritis in pigs using a DNA amplification technique (PCR).

    J Vet Med B 1995, 42:51-58. OpenURL

  2. Citron DM, Warren YA, Hudspeth MK, Goldstein EJ: Survival of aerobic and anaerobic bacteria in purulent clinical specimens maintained in the Copan Venturi Transystem and Becton Dickinson Port-a-Cul transport systems.

    J Clin Microbiol 2000, 38:892-894. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  3. Engström BE, Fermèr C, Lindberg A, Saarinen E, Båverud V, Gunnarsson A: Molecular typing of isolates of Clostridium perfringens from healthy and diseased poultry.

    Vet Microbiol 2003, 94:225-235. PubMed Abstract | Publisher Full Text OpenURL

  4. Garmory HS, Chanter N, French NP, Bueschel D, Songer JG, Titball RW: Occurrence of Clostridium perfringens beta2-toxin amongst animals, determined using genotyping and subtyping PCR assays.

    Epidemiol Infect 2000, 124:61-67. PubMed Abstract | Publisher Full Text OpenURL

  5. Herholz C, Miserez R, Nicolet J, Frey J, Popoff M, Gibert M, Gerber H, Straub R: Prevalence of β2-toxigenic Clostridium perfringens in horses with intestinal disorders.

    J Clin Microbiol 1999, 37:358-361. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  6. Hindiyeh M, Acevedo V, Carroll KC: Comparision of three transport systems (Starplex StarSwab II, the new Copan Vi-Pak Amies Agar Gel Collection and Transport Swabs, and BBL Port-a-Cul) for maintenance of anaerobic and fastidious aerobic organisms.

    J Clin Microbiol 2001, 39:377-380. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  7. Hudspeth MK, Citron DM, Goldstein EJ: Evaluation of a novel specimen transport system (Venturi Transystem) for anaerobic bacteria.

    Clin Infect Dis 1997, 25(Suppl 2):132-133. OpenURL

  8. Kadra B, Guillou JP, Popoff M, Bourlioux P: Typing of sheep clinical isolates and identification of enterotoxigenic Clostridium perfringens strains by classical methods and by polymerase chain reaction (PCR).

    FEMS Immunol Med Microbiol 1999, 24:259-266. PubMed Abstract | Publisher Full Text OpenURL

  9. Klaasen HLBM, Molkenboer MJCH, Bakker J, Miserez R, Hani H, Frey J, Popoff MR, van den Bosch JF: Detection of the beta2 toxin gene of Clostridium perfringens in diarrhoeic piglets in The Netherlands and Switzerland.

    FEMS Immunol Med Microbiol 1999, 24:325-332. PubMed Abstract | Publisher Full Text OpenURL

  10. Perry JL: Assessment of swab transport systems for aerobic and anaerobic organism recovery.

    J Clin Microbiol 1997, 35:1269-1271. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  11. Petit L, Gibert M, Popoff MR: Clostridium perfringens: toxinotype and genotype.

    Trends Microbiol 1999, 7:104-110. PubMed Abstract | Publisher Full Text OpenURL

  12. Roelofsen E, Van Leeuwen M, Meijer-Severs GJ, Wilkinson MH, Degener JE: Evaluation of the effects of storage in two different swab fabrics and under three different transport conditions on recovery of aerobic and anaerobic bacteria.

    J Clin Microbiol 1999, 37:3041-3043. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  13. Songer JG: Clostridial enteric diseases of domestic animals.

    Clin Microbiol Rev 1996, 9:216-234. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  14. Waters M, Savoie A, Garmory HS, Bueschel D, Popoff MR, Songer G, Titball RW, McClane BA, Sarker MR: Genotyping and phenotyping of beta2-toxigenic Clostridium perfringens fecal isolates associated with gastrointestinal diseases in piglets.

    J Clin Microbiol 2003, 41:3584-3591. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  15. Yamagishi T, Sugitani K, Tanishima K, Nakamura S: Polymerase chain reaction test for differentiation of five toxinotypes of Clostridium perfringens.

    Microbiol Immunol 1997, 41:295-299. PubMed Abstract OpenURL

  16. Österblad M, Järvinen H, Lönnqvist K, Huikko S, Laippala P, Viljanto J, Arvilommi H, Huovinen P: Evaluation of new cellulose sponge-tipped swab for microbiological sampling: a laboratory and clinical investigation.

    J Clin Microbiol 2003, 41:1894-1900. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL